Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., DNA-binding transcriptional repressor of ribose metabolism (NCBI) from Escherichia coli BW25113

 Score =  102 bits (255), Expect = 1e-26
 Identities = 85/312 (27%), Positives = 150/312 (48%), Gaps = 24/312 (7%)

Query: 6   TILDIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGGSQKVV 65
           T+ D+ARL+GV  STVS V+  D  V     AKVE  I E  Y PS  A++++      +
Sbjct: 3   TMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTI 62

Query: 66  GIIISRLDSPSENKAVSTMLQAFYAHGYDVVIMESQFSREKTNAHLKVLAKRQVDGVIVF 125
           G++I+   +P  ++ V  + ++ +  GY +V+  ++   ++ N +L+ L +++VDG+++ 
Sbjct: 63  GMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLL 122

Query: 126 GFTDIDHDALLSWQHRCVLLAMHS----DEISSINYDNAGV-IERALQHLAQKQLRDIAF 180
                     +  ++  V   M      D  S +  DN+ +  + A Q+L  K    IA 
Sbjct: 123 CTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRIAC 182

Query: 181 IGVDPRDKTTGEQRLNAY--------LNWCVEHEIVANYQTGQLHHESAYLLVDKVLTE- 231
           I   P DKT    RL  Y        LN    +E+     TG       +  + ++L+  
Sbjct: 183 I-TGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEV-----TGDFEFNGGFDAMRQLLSHP 236

Query: 232 -QTQAIVCASDTLALGVIKRLQELQ---RDDVVVTGVGGNELLSFLFPNIFSVDPGYREA 287
            + QA+   +D +A+GV + L + +     D+ V G    EL SF+ P + ++     E 
Sbjct: 237 LRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDEL 296

Query: 288 GKLAADLLIEQL 299
           G+LA D+LI ++
Sbjct: 297 GELAIDVLIHRI 308