Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Ribose operon repressor from Alteromonas macleodii MIT1002

 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 93/344 (27%), Positives = 148/344 (43%), Gaps = 45/344 (13%)

Query: 1   MNRKLTILDIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGG 60
           M  K T  DIA L+GV +STVSR L N P V  ETR +V+++  E  Y   K+A  +R  
Sbjct: 4   MKEKATSFDIAHLAGVSQSTVSRALNNSPLVNQETRDRVQRIARELNYKVDKNASNLRKQ 63

Query: 61  SQKVVGIIISRLDSPSENKAVS--------TMLQAFYAHGYDVVIMESQFSREKTNAHLK 112
               + +++   D  S++  ++        ++ +A     YD+++    F     + H +
Sbjct: 64  KSSTIALLLFE-DPTSDDSMINPFFLAMLGSITRACAQANYDLLV---SFQNLDDDWHAE 119

Query: 113 VLAKRQVDGVIVFGFTDI----DHDALLSWQHRCVLLAMHSDEIS---SINYDNAGVIER 165
                + DG+I+ G+ D     +  A L  Q    +     DE     SI  DN    + 
Sbjct: 120 YEDSNKADGIILLGYGDYTDYQNKVAQLESQGTHFVRWGAPDEAHPGVSIGCDNYQGGQS 179

Query: 166 ALQHLAQKQLRDIAFIGVDPRDKTTGEQRLNAYLNWCVEHEI-VANYQTGQLHHESAYLL 224
              HL        AFIG +       + R N Y      H +  ++ Q   +  E A   
Sbjct: 180 ITSHLIGLGKTSFAFIGDNGDHAPEFKARFNGYFETLQSHGLDQSSVQRNAISTEDAGSE 239

Query: 225 VDKVLT---EQTQAIVCASDTLALGVIKRLQELQ---RDDVVVTGVGGNELLSFLFPNIF 278
             K L    E  QAIVCASD +A+GV++ L++ +    DDV V G     + ++  P++ 
Sbjct: 240 AVKSLLQSGELPQAIVCASDLIAMGVLRALRQAKVNVPDDVAVVGYDNIAVSAYTTPSLT 299

Query: 279 SVDPGYREAGKL-------------------AADLLIEQLCGSD 303
           +V    + AG+L                    AD++I Q CGS+
Sbjct: 300 TVQQNTKLAGELLVNTLLKAINNEDVQDYLMPADIIIRQSCGSE 343