Pairwise Alignments

Query, 283 a.a., flap endonuclease Xni from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., 5'-3' exonuclease (including N-terminal domain of PolI) from Enterobacter asburiae PDN3

 Score =  278 bits (710), Expect = 1e-79
 Identities = 135/253 (53%), Positives = 185/253 (73%), Gaps = 6/253 (2%)

Query: 25  MSLHLVIIDALNLIRRVHSAQPDPNDITRTAETTTRTLQRIINEAQPSHMIAVFDHHLSD 84
           M++HL+I+DALNLIRR+H+ Q  P       +T    L+++I  ++P+H +AVFD    +
Sbjct: 1   MAVHLLIVDALNLIRRIHAVQGTP-----CKDTCLHALEQLIRHSEPTHAVAVFDDEARN 55

Query: 85  RGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACKVA 144
            GWR + LP YKA R PMP+ L   +  ++ A+ Q G+    ++G+EADDL ATLA KVA
Sbjct: 56  TGWRHQRLPDYKAGRAPMPNDLHAELPMLRAAFEQRGVPCWGAQGNEADDLAATLAVKVA 115

Query: 145 AHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGVS 204
           +   + TI+STDKGYCQLLSPT++IRDYFQ+RWLD PFIA EFGV+P QL DYWGL G+S
Sbjct: 116 SAGYQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVSPEQLPDYWGLAGIS 175

Query: 205 SSQIPGVAGIGPKAAKEILNQFSSIEEAYAS-PELPAKYRKKLDPHIEMARICKQVSALK 263
           SS++PGVAGIGPK+A ++L  F S+E  YA   E+P K+RKKL+ H EMA IC++++ L+
Sbjct: 176 SSKVPGVAGIGPKSAAQLLTDFQSLEGIYARLDEVPEKWRKKLEAHKEMAFICREIATLQ 235

Query: 264 TDIELGFNLQDIR 276
           TD++L  NLQ +R
Sbjct: 236 TDLQLDGNLQQLR 248