Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 57.0 bits (136), Expect = 5e-13
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 24/183 (13%)

Query: 136 DNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAF 195
           + Q  Q  +++ +  ++ +Q + + E I    + + ++G   V  LG  +         F
Sbjct: 112 ERQRLQLALRENKLISVQQQGKWLEEQIASLATTQTDRGL--VMTLGDVL---------F 160

Query: 196 PEGSAFLQPKFRPLVRQIAELVKDIPGKV-RVTGHTDNQKLDSELYRSNWDLSAQRAVSV 254
             G A L+      V +I + ++  P +V R+ G+ DN   +    R N  LS  RA SV
Sbjct: 161 DTGEAELKNSANRTVLKIVQFLQLNPKRVVRIEGYADNTGGE----RENLKLSRDRAQSV 216

Query: 255 AQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISILQGDPVYSDEVPSLG 314
           A  +  +   D  R+QV G  D  P+  N +E  RA NRRVEI       V+SDE   LG
Sbjct: 217 ADVLVDL-GIDEKRIQVEGYGDQYPVEANASERGRAQNRRVEI-------VFSDEKGQLG 268

Query: 315 GGQ 317
             +
Sbjct: 269 AAR 271