Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., flagellar motor protein MotD from Pseudomonas simiae WCS417

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 56/283 (19%)

Query: 17  WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 76
           WL ++AD ++LL  FFV++ S S ++  K+K I+ ++   F   +R  +K IP G     
Sbjct: 17  WLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALIGVFNDADR-SLKAIPIG----- 70

Query: 77  QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLTGGQSAETSVQD 136
            E RP    P                                           A+  V D
Sbjct: 71  -EERPKTVTP-------------------------------------------AKPLVND 86

Query: 137 NQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFP 196
           +  T + +        S+ ++++A+ I  A    I    + V      ++I +     F 
Sbjct: 87  SDETAAGVG-----GTSDPLKSIADDISAAFGDLISSNQMTVRGNELWVEIELNSSLLFA 141

Query: 197 EGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ 256
              A    +   ++ ++A ++K     + V G TDN  + +  Y +NW+LS+ RA S+ +
Sbjct: 142 SADALPSDQAFTIIDKVAAILKPFENPIHVEGFTDNFPISTAQYPTNWELSSARASSIVR 201

Query: 257 EMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISI 299
            M  ++  +  RL   G  + QP+  N T   RA NRRV + +
Sbjct: 202 -MLAMQGINPGRLASVGYGEFQPVANNATAEGRAKNRRVVLVV 243