Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 80.1 bits (196), Expect = 8e-20
 Identities = 92/357 (25%), Positives = 150/357 (42%), Gaps = 75/357 (21%)

Query: 16  AWLGTFADLMSLLMCFFVLL--LSFSEMDVLK-----FKQIAGSMKFAFGVQNRLEVKDI 68
           AW   +AD ++ +M FF+LL  L+ +  D  K     F  ++ S + + G    L  K I
Sbjct: 28  AWKVAYADFVTAMMAFFLLLWLLNVTTSDQRKGIADYFSPVSVSREQS-GSGGMLGGKTI 86

Query: 69  PKGTSIIAQEFRPGRPEPTPIDVI------MQQTIDITQQTLEFQEGESDRAGGNQRDSG 122
               ++   +  P  P    + V        QQT D    T      ES    G     G
Sbjct: 87  ----TVPGAQVSPSSPMSADVPVSGPPGYSAQQTEDADDPT------ESTSGPGQGTGPG 136

Query: 123 QLTGGQSAETSVQDNQ--NTQSEMQQQQ----------AQAMSEQMETVAESIKKAL--- 167
           +   G + +  V D +   T++E Q++            Q   E++    E +K+A+   
Sbjct: 137 KSASGAAPDADVADQKPNETRAEFQKRMEEMAKQLGIPGQKPGEKLSDFGERVKEAMDSL 196

Query: 168 ------SREIEQGAIEV----------ENLGQQIDIRIREKGA------------FPEGS 199
                 +R+ +Q A E+          E L Q + I    +G             FP GS
Sbjct: 197 QGAAKEARQFQQAATEIRQAIQSVPELEPLAQNLMIDQTPEGLRIQIVDQDRVSMFPGGS 256

Query: 200 AFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQEME 259
             + P+ R LV+Q+A+ +  +P K+ ++GHTD+    +   R NWDLS +RA +  + + 
Sbjct: 257 GQMYPQTRQLVQQVAKALSKLPNKLSISGHTDSSPFPAGSGRDNWDLSTERANATRRAL- 315

Query: 260 KVKDFDHLRLQ-VRGLADTQPLGPNDTEAQRATNRRVEISILQGDPVYSDEVPSLGG 315
                D  R+Q V G AD  PL  +   + R  NRR+ + +L+     +   PS GG
Sbjct: 316 LAGGIDPTRIQDVVGKADRDPLVADQPNSPR--NRRIAMVLLR----ETQAAPSAGG 366