Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., flagellar motor protein from Pseudomonas simiae WCS417

 Score =  139 bits (350), Expect = 5e-38
 Identities = 78/247 (31%), Positives = 141/247 (57%), Gaps = 5/247 (2%)

Query: 1   MDLATLVGLIGGMAFVIMAMVL-GGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAA 59
           MD+ +L+G+I     +I    L GG +    +  + LIV+GG+V   L++  +  F  A 
Sbjct: 1   MDVLSLIGIIMAFVAIIGGNYLEGGHLGALANGPAALIVIGGTVGAALLQSPLSSFKRAM 60

Query: 60  KI-AGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEI--PNPFMQKGIDLLVDGH 116
           +I     F  + D P   I ++V  +  ARK G L LE +    P+ + +KG+ LLVDG 
Sbjct: 61  QILVWIIFPPRVDLPGG-IDRVVNWSLTARKEGLLGLEGVADAEPDSYARKGLQLLVDGA 119

Query: 117 DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIG 176
           + + +R+ L+ D    + R     +VF + G  AP +G+IG ++GL+ ++ N+ DP  +G
Sbjct: 120 EPEAIRSILEVDFYTQESRDINAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQLG 179

Query: 177 PAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDS 236
             +AVA + T+YG   +N++  P+A KL     +++  R ++++G+L+I +G+NPR I+ 
Sbjct: 180 SGIAVAFVATIYGVASANLVLLPVASKLKSIAMRQSRYREMLLEGILSIAEGENPRSIEL 239

Query: 237 YLKNYLN 243
            L+ +++
Sbjct: 240 KLQGFMD 246