Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., flagellar motor rotation protein from Pseudomonas putida KT2440

 Score =  139 bits (349), Expect = 7e-38
 Identities = 78/247 (31%), Positives = 144/247 (58%), Gaps = 7/247 (2%)

Query: 1   MDLATLVGLIGGMAFVIMA---MVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFG 57
           MD+ +L+GLI  +AFV +     + GG +   V+  + LIV+GG++   L++  +  F  
Sbjct: 1   MDVLSLIGLI--LAFVAIVGGNFLEGGHVGALVNGPAALIVLGGTLAAALLQSPLTSFKR 58

Query: 58  AAKIAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEM--EIPNPFMQKGIDLLVDG 115
           A +I               I ++V  +  ARK G L LE +    P+P+ +KG+ LLVDG
Sbjct: 59  ALQILRWILFPPRVDLAGGIDRVVNWSLTARKEGLLGLEGVADSEPDPYARKGLQLLVDG 118

Query: 116 HDADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSI 175
            + + +R+ L+ D++  + R  +  +VF + G  AP +G+IG ++GL+ ++ N+ DP  +
Sbjct: 119 AEPEAIRSILEVDLLTQEGRDIQAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQL 178

Query: 176 GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVID 235
           G  +AVA + T+YG   +N++  P+A KL     +++  R ++++G+L+I +G+NPR I+
Sbjct: 179 GNGIAVAFVATIYGVASANLVLLPVASKLKAIVMRQSRYREMLLEGLLSIAEGENPRSIE 238

Query: 236 SYLKNYL 242
             L+ ++
Sbjct: 239 LKLQGFM 245