Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., Flagellar motor rotation protein MotA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 59/274 (21%), Positives = 115/274 (41%), Gaps = 51/274 (18%)

Query: 21  VLGGSIMMFVDVVSVLIVVGGSVFVVL--MKFEMGQFFGAA---------------KIAG 63
           V+ G ++  V +  V I  GG++ VVL  + FE+    GAA                  G
Sbjct: 3   VIIGFVVSMVCIFGVFIFHGGNIGVVLKALPFELTTILGAALGAFLINNQMKVVKASFKG 62

Query: 64  KAFMFKADAPE-----DLIAKIVEMADAARKGGFLALEEMEIPNP--------------- 103
            A  FK          +L+A + ++   ARK G +A+E+ ++ NP               
Sbjct: 63  LAQCFKGSRYTKARYMELLALLFDILQKARKEGLMAIEQ-DVENPHESALFKKYPTIAAD 121

Query: 104 -----FMQKGIDLLVDGH-DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVA---PAMG 154
                F+   + ++V G+ +A  + + +  +I   +  H +      A G +A   PA G
Sbjct: 122 HHVVEFITDYLRMMVSGNLNAHEIESLMDAEI---ETHHQEAHAPVAAIGRLAGGLPAFG 178

Query: 155 MIGTLVGLVAMLSNMDDPKSI-GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETL 213
           ++  ++G+V  + ++  P ++ G  +  AL+ T  G +L+  +F P+   L  + ++ + 
Sbjct: 179 IVAAVLGVVNTMGSVGQPPAVLGAMIGSALVGTFLGILLAYGVFEPLGGLLDQKMEEGSK 238

Query: 214 NRRLIMDGVLAIQDGQNPRVIDSYLKNYLNASKR 247
               +   +L+   G  P     + +  L A  R
Sbjct: 239 ELLCVKTTLLSSMQGYAPLTAIEFGRKVLFADVR 272