Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., flagellar motor stator protein MotA from Magnetospirillum magneticum AMB-1

 Score = 53.5 bits (127), Expect = 5e-12
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 30/264 (11%)

Query: 3   LATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKIA 62
           + T V +IGG A        GG + +       LI++G +V  +L+        G +K  
Sbjct: 8   VVTFVSVIGGYA------APGGHLSVLFQPFEWLIIIGAAVGSLLLGNPKTIIIGISKNL 61

Query: 63  GKAFMFKADAPED---LIAKIVEMADAARKGGFLALEE-MEIPN--PFMQKGIDLLVDGH 116
           G  F       +D   L++ +  +   A+  G LALE  +E P+  P   K      D H
Sbjct: 62  GLVFKGAHHGKDDYIELLSVLYAVFKLAKTKGDLALESHVEKPDESPLFGKFPKFSSDHH 121

Query: 117 -----------------DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTL 159
                            +A  + + +  ++    + + +        GD  PA+G++  +
Sbjct: 122 TRTFFCDYLRLLTLGTSNAHELESIIDGELEAHHKHYHEIAHAVNLMGDAMPALGIVAAV 181

Query: 160 VGLVAMLSNMDDPKSI-GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLI 218
           +G++  + ++ +P  + G  +  AL+ T  G ++S     PIA  + L  D +      I
Sbjct: 182 LGVIHTMGSITEPPEVLGHLIGAALVGTFSGVLISYAFIAPIARNMQLCFDSDHYYFLAI 241

Query: 219 MDGVLAIQDGQNPRVIDSYLKNYL 242
             G+L    G  P+V   + +  L
Sbjct: 242 KAGLLGHMQGYAPQVSIEFARKIL 265