Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., flagellar motor protein MotA from Magnetospirillum magneticum AMB-1

 Score =  119 bits (298), Expect = 6e-32
 Identities = 75/263 (28%), Positives = 135/263 (51%), Gaps = 12/263 (4%)

Query: 1   MDLATLVGLIGGMAFVIMAMV-LGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAA 59
           M L+T++G    +  ++ +++ L  +  +F+ +  +L+V+GG++    + FEM ++   A
Sbjct: 1   MSLSTVIGFTLSLLLIVGSIIELTTNFKIFLHLSGLLMVIGGTLAAAHVGFEM-RYVRQA 59

Query: 60  KIAGKAFMFKADAPEDL----IAKIVEMADAARKGGFLALEE----MEIPNPFMQKGIDL 111
               KA  F       +    +A+++      +K G  ALE     ++  + F+  G+ L
Sbjct: 60  LGNIKAIFFSPKMARGMLTNEVARVIRWGYLLQKSGIQALESDVKSLKSQDAFLAYGVGL 119

Query: 112 LVDGHDADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNM-D 170
           +V G+    VR  L   +    +RH+   ++ +     APA GM+ TLVGLV ML NM D
Sbjct: 120 VVSGYTGPEVRHMLDNQVETAFQRHTVSVEILKYMASNAPAFGMMATLVGLVVMLDNMGD 179

Query: 171 DPKSIGPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQN 230
           DP  +G  MAV LL TLYG + + ++  P A+K   R         L+ +G++ + + ++
Sbjct: 180 DPSKLGGGMAVGLLGTLYGVLFARLVLMPAAEKAHQRESIIRFRNMLVAEGLVMLAERRS 239

Query: 231 PRVIDSYLKNYLNASKRILDVDK 253
           PR I   + +YL+ +    D+DK
Sbjct: 240 PRFIQDAMNSYLDPAIH-FDIDK 261