Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., flagellar motor stator protein MotA from Erwinia tracheiphila SCR3

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 57/266 (21%), Positives = 118/266 (44%), Gaps = 38/266 (14%)

Query: 16  VIMAMVLGGSIMMFVDV-----VSVLIVVGGSVFVVLMKFEMGQFFGAAKIAGKAF---- 66
           +++  VLGG  M+  ++      S L+++GG+    +  F +G    A K   K+F    
Sbjct: 9   LVLGSVLGGFAMVGGELGALYQPSELLIIGGAA---VGAFIVGNNGKAIKATMKSFPLLM 65

Query: 67  ---MFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNP-------------------- 103
               +      DL+A +  +   +R+ G L+LE  +I NP                    
Sbjct: 66  RGAKYNKSVYMDLMALLYRLMAKSRQQGMLSLEA-DIDNPQESEIFANYPRIFADKRLVD 124

Query: 104 FMQKGIDLLVDGH-DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGL 162
           F+   + L++ G+ +A  + A + ++I   +          ++ GD  PA G++  ++G+
Sbjct: 125 FITDYLRLMISGNMNAFEIEALMDEEIETYEHECEVPATALQSMGDSLPAFGIVAAVMGV 184

Query: 163 VAMLSNMDDPKS-IGPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDG 221
           V  L+  D P + +G ++A A++ T  G +L+     P+   L  +  + T   + I   
Sbjct: 185 VHTLAAADRPAAELGASVAHAMVGTFLGILLAYGFISPLGSVLRQKCAETTKMMQCIKVT 244

Query: 222 VLAIQDGQNPRVIDSYLKNYLNASKR 247
           +L+  +G  P++   + +  L ++ R
Sbjct: 245 LLSSLNGYAPQIAVEFGRKTLYSTDR 270