Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., Chemotaxis protein PomA from Azospirillum sp. SherDot2

 Score =  168 bits (426), Expect = 1e-46
 Identities = 96/258 (37%), Positives = 148/258 (57%), Gaps = 5/258 (1%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           +D+ATLVGL      +++A+  GGS   F+D  S+LIV+GG++ V    F +G    A K
Sbjct: 50  LDVATLVGLAAAAGVILIAITTGGSARAFLDPPSLLIVLGGTLAVTTASFSLGDVAVAWK 109

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPN----PFMQKGIDLLVDGH 116
            A    + +   P+ +  +++ +A+AAR+ G   L  + +P     PF+ + + L+ +G 
Sbjct: 110 NAAAVLVHQTLDPKGVARQVLLLAEAARRAGPETLRNV-LPELRAEPFLHRSVTLITEGL 168

Query: 117 DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIG 176
             D +   L  ++  T   H K   V R   +VAPAMG+IGTLVGLV ML ++ DP +IG
Sbjct: 169 PPDAIERMLTGEVEATVGGHGKSAGVLRRASEVAPAMGLIGTLVGLVQMLGSLSDPSAIG 228

Query: 177 PAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDS 236
           PAMA+ALLTT YGAVL N++  P+A K+    +++ L + L   G ++I   +NPR ++ 
Sbjct: 229 PAMALALLTTFYGAVLGNVVLSPLAAKVERAAEEDALVKTLYTIGAVSIARQENPRRLEM 288

Query: 237 YLKNYLNASKRILDVDKE 254
            L   L   KRI   D+E
Sbjct: 289 LLNAVLPPGKRIQYFDRE 306