Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., Motility protein A from Azospirillum sp. SherDot2

 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 63/271 (23%), Positives = 106/271 (39%), Gaps = 42/271 (15%)

Query: 18  MAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEM--------GQFFGA---------AK 60
           M +++G  I++F  V    I+ GG + V+ M FE         G FF A          K
Sbjct: 1   MFVMIGFGIVIF-SVFGGYILGGGHMGVLWMPFEFMIILGSGAGAFFIANPKSVVTHTGK 59

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADA---ARKGGFLALEE-MEIP--NPFMQKGIDLLVD 114
             G  F       ED +  +  M      A+  G LALE+ +E P  +P  Q+      D
Sbjct: 60  ELGHLFKGPKYKKEDFLEVLTMMYQVFKIAKTKGLLALEQHIEKPEDSPLFQQFPKFYGD 119

Query: 115 GHDADVVRATLQ-----------------KDIVLTDERHSKGTQVFRAFGDVAPAMGMIG 157
            H    +   L+                 +DI      H +     +A  D  PA+G++ 
Sbjct: 120 HHAIAFLCTYLRLMSLGADNPHELVDLMDEDIETMHHEHQRIADAIQAVADAVPALGIVA 179

Query: 158 TLVGLVAMLSNMDDPKSI-GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRR 216
            ++G++  + ++ +P  + G  +  AL+ T  G +++     PIA  L      E    +
Sbjct: 180 AVLGVIHTMGSITEPPEVLGKLIGGALVGTFTGILVAYGFLAPIASGLKNVYHAEGKYYQ 239

Query: 217 LIMDGVLAIQDGQNPRVIDSYLKNYLNASKR 247
            +  G++A   G  P +   Y +N L    R
Sbjct: 240 AMKTGLIAHLSGYAPAISVEYARNVLEPEYR 270