Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., Geranylgeranyl diphosphate synthase from Xanthobacter sp. DMC5

 Score =  121 bits (303), Expect = 3e-32
 Identities = 92/248 (37%), Positives = 122/248 (49%), Gaps = 6/248 (2%)

Query: 33  AMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDEL 92
           AMR+ LL  GKR RP LV      L      +     A+E IHA SLI DDLP MDD  +
Sbjct: 86  AMRHILLAPGKRLRPLLVMAAAMQLDASEHAVLDFGCALEMIHASSLIIDDLPCMDDAMV 145

Query: 93  RRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGM 152
           RR +PT H+++ E  A+L   AL  L+ ++   G      +  R+  +  L++A G+ G+
Sbjct: 146 RRAQPTTHVKYGEDVAVLAAVAL--LSRSLGVAGAAPGTSDHVRLDAVCILSKAVGSLGL 203

Query: 153 CLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEA 212
           C GQ  DL       SL   E ++R KTG L   A+ +   AA     A   HL   A  
Sbjct: 204 CGGQYDDLRPSPGR-SLAATEDVNRRKTGVLFSAAVEIAGRAAA-ADEAQAGHLRALAGH 261

Query: 213 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLAL 272
           VG A+Q+ DDILD       LGK  G D   NK+T  A LG   A++     L  AL A 
Sbjct: 262 VGSAYQILDDILDNSGSAAALGKDVGKD--ANKATVIASLGAPRARKLLSEHLAGALAAS 319

Query: 273 EAIPYNTE 280
           + +  N E
Sbjct: 320 KELGPNKE 327