Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., Ribosomal large subunit pseudouridine synthase D from Xanthobacter sp. DMC5

 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 29/244 (11%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPL---------HR 52
           L I ++D++L+ ++KPAG++VH +    H +  ++  L    G  +  +         HR
Sbjct: 111 LTIAFEDDHLIVIDKPAGLVVHPA--PGHASGTLVNALLYHCGDSLSGIGGVRRPGIVHR 168

Query: 53  LDRPTSGVLVFALSSQIASEVMPMFANH----EMEKTYHAIVRGWIEEANVLDYPLKEEL 108
           +D+ TSG+LV A S      +   FA+H     +E+ Y A V G  E    +D P+    
Sbjct: 169 IDKDTSGLLVVAKSDAAHKGLAAQFADHGRTGPLERAYLAFVWGVPEPKGRVDAPIDRHP 228

Query: 109 DKIADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHM 168
                K A +    + AVT +  L         GK       L+E + +TGR HQ+R HM
Sbjct: 229 TH-RQKMAVRGS-GRHAVTHWEVLETF-----VGKTGAEVASLIECRLETGRTHQIRVHM 281

Query: 169 AHLRHPIVGDTTHGDGVHNRLFREHFSAQ-------RLMLHASELRFMHPYTQQPLVIRA 221
           AH  HP++GD  +G G   ++      A+       R  LHA+ L F HP T + L   +
Sbjct: 282 AHAGHPLLGDEVYGQGFRTKVSLLPDEARACLAALGRQALHAARLGFAHPVTGEELSFES 341

Query: 222 GLDE 225
            L +
Sbjct: 342 ELPQ 345