Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

 Score =  102 bits (254), Expect = 9e-27
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 16/226 (7%)

Query: 4   IVYQDEYLVAVNKPAGMLVHR-SWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLV 62
           I+++D  L+ +NKP G+ VH  S L+    E   Q   D   + +  +HRLDR TSG+L+
Sbjct: 97  IIFEDNKLIVINKPCGIAVHGGSGLNFGVIEAFRQLRPD--AKELELVHRLDRDTSGLLM 154

Query: 63  FALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADKFAKQDKE 121
            A    +   +        ++K Y A+VRG W      +  PL++   +  ++  + D+E
Sbjct: 155 IAKKRSMLRHLHTALRGDGVDKRYMALVRGNWASSIKSVRAPLQKSNLRSGERMVEVDEE 214

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
            + A+T ++ L +       G FAT    ++E +P TGR HQ+R H  H  H I GDT +
Sbjct: 215 GKEALTLFKVLRRF------GDFAT----MVEAKPVTGRTHQIRVHTLHAGHCIAGDTKY 264

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVW 227
           GD   ++  R+    +RL LHA  L    P   + L ++A +DE+W
Sbjct: 265 GDEDFSKEIRD-LGGKRLFLHAYMLTVPLPDGGE-LKLQAPVDEMW 308