Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Variovorax sp. SCN45

 Score =  107 bits (266), Expect = 4e-28
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 4   IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLVF 63
           ++ +D+ ++A++KPAG+ VH            ++T R    + +  +HRLDR TSG+L+ 
Sbjct: 121 VLLEDDAVLAIDKPAGVAVHGGSGVSFGVIEQLRTARPG-AKFLELVHRLDRETSGILLV 179

Query: 64  ALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEEL----------DKIA 112
           A        +   F   E  KTY A+V G W     VLD PL + L          ++  
Sbjct: 180 AKKRSALVALQDQFRERETGKTYLALVEGAWPANKKVLDAPLAKYLLPDGSGAGAGERRV 239

Query: 113 DKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLR 172
              AK   +A  AVT  R LA++ LP        T   L+ +  KTGR HQ+R H+A   
Sbjct: 240 RVVAKDHPDAMRAVTLVRVLARLTLP-----GDATPMSLLAVTIKTGRTHQIRVHLASAG 294

Query: 173 HPIVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGL 223
           HPI GD  +G+    R  ++    +R+ LHA  L+F HP + + + ++AGL
Sbjct: 295 HPIAGDDKYGESDRQRALQK-IGLKRMFLHAWRLQFNHPASGERVALQAGL 344