Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (266), Expect = 7e-28
 Identities = 79/233 (33%), Positives = 110/233 (47%), Gaps = 40/233 (17%)

Query: 2   LEIVYQDEYLVAVNKPA------GMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDR 55
           + IVYQD+ +V VNKPA      G+ VH S L + + +F          + VF LHRLD 
Sbjct: 356 ITIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQ-------AEGVFALHRLDM 408

Query: 56  PTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEA-NVLDYPLKEELDKIADK 114
            TSG+LVFAL+ +   ++   F +  ++K Y A++ G + E    +  PL  +LD     
Sbjct: 409 STSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLD----- 463

Query: 115 FAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAH---L 171
               D+  Q         A         +   TR   + + P TGR HQLR H AH   L
Sbjct: 464 ----DRPRQKVCWQQGKPALTHWETVQVEQNRTR---VYLYPHTGRTHQLRVHCAHHLGL 516

Query: 172 RHPIVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLD 224
             PIVGD  +G              +RL LHA +L F HPYT+QP+  +   D
Sbjct: 517 NAPIVGDDLYG-----------LQDKRLFLHAEQLSFAHPYTKQPMTFQVDAD 558