Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score =  104 bits (259), Expect = 2e-27
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 19/223 (8%)

Query: 4   IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLVF 63
           IVY+D++L+ +NKP+G  VH            ++ LR Q  + +  +HR+DR TSG+L+ 
Sbjct: 97  IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQ-ARFLELVHRIDRDTSGILLV 155

Query: 64  ALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPL-KEELDKIADKFAKQDKE 121
           A        +   F    ++K Y+A+V G W  E  V++ PL K E++ I     + +  
Sbjct: 156 AKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIV----RVNPN 211

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
            + + T +R L K         FA     L++  P TGR HQ+R H  ++ HPI  D  +
Sbjct: 212 GKPSETRFRILEK---------FAEAT--LVQASPVTGRTHQIRVHTQYMGHPIAWDDRY 260

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLD 224
           GD   +  +   F  +RL LHA+ ++F+HP +++ L I A L+
Sbjct: 261 GDRRFD-AYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302