Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., pseudouridine synthase, RluA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  102 bits (253), Expect = 1e-26
 Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 32/253 (12%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHET-----EFVMQTLRDQIGQHVFP--LHRLD 54
           L+IV++D++L+ VNKPAGM+VH ++ +   T      +    L +  G    P  +HR+D
Sbjct: 116 LDIVHEDDHLLVVNKPAGMVVHPAYGNWTGTLVNGLVYHFSQLPEMPGNSGRPGLVHRID 175

Query: 55  RPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGW-IEEANVLDYPLKEEL--DKI 111
           + TSG+LV A S Q  + +   F +H +E+TY A+V G   E+A  +D  +       K+
Sbjct: 176 KDTSGLLVIAKSEQAMTGLAKQFFDHSIERTYIALVWGEPQEDAGTIDAHVGRSARDRKV 235

Query: 112 ADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHL 171
            D F + D + ++AVT ++ L ++       ++ +   C +E    TGR HQ+R HM +L
Sbjct: 236 MDVFPEGD-QGKNAVTHWKVLKRL-------RYVSLVQCNLE----TGRTHQIRAHMKYL 283

Query: 172 RHPIVGDTTH-GDGVHNRLFREHFSA---------QRLMLHASELRFMHPYTQQPLVIRA 221
            HP+  D  + GD +        + A          R  LHA  L F HP +Q  L   +
Sbjct: 284 GHPLFNDAVYGGDKIRKGTQFSKYKAFVNNCFKLLPRQALHAKSLGFSHPISQDFLQFTS 343

Query: 222 GLDEVWQGLLSEF 234
            L E  Q +L  +
Sbjct: 344 NLPEDMQSVLERW 356