Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., tRNA pseudouridine synthase C from Alteromonas macleodii MIT1002

 Score =  253 bits (645), Expect = 4e-72
 Identities = 118/236 (50%), Positives = 165/236 (69%), Gaps = 3/236 (1%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVL 61
           L ++YQDE+++A+ KP G+LVHRS +D+HET F +QTLRDQIGQHV+P HRLDRPTSGVL
Sbjct: 34  LPVLYQDEHIIAIEKPPGLLVHRSPIDRHETVFAVQTLRDQIGQHVYPAHRLDRPTSGVL 93

Query: 62  VFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANVLDYPLKEELDKIADKFAKQDKE 121
           VF+ SS+IA+++     + ++ KTYHAIVRG++     +DY LK   DKIADK  +  + 
Sbjct: 94  VFSFSSEIAAKLGQQMMDKQVVKTYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 153

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
            Q A T Y+ +AK E+P   GK+ + RY L+++ P TGRKHQLRRHM H+RHPI+GDTTH
Sbjct: 154 PQPASTMYQSVAKFEVPEPVGKYQSARYSLVKLSPSTGRKHQLRRHMVHIRHPIIGDTTH 213

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLD---EVWQGLLSEF 234
           GDG  N+  ++HF+   L L  +++ F HP T + + I + +     +W   L+ F
Sbjct: 214 GDGKQNKFAKQHFNFNNLALSCTQMGFSHPITGKWVTINSQMHSEMRLWLEKLAPF 269