Pairwise Alignments

Query, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., glycosylase from Pseudomonas simiae WCS417

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 112/440 (25%), Positives = 184/440 (41%), Gaps = 40/440 (9%)

Query: 34  ELEKIRERGVLRVGTLNNPLSYYIGPDGPTGLDYELAREFAKELG--------VKLEMKP 85
           +L +IR    LRV    +  S         G++Y   R F + L         + L++ P
Sbjct: 38  DLAEIRSSRTLRVLVNQSRNSSGEVQGQAIGVEYHRLRAFEQYLNGHARDGQEINLKIIP 97

Query: 86  AYRLSSLFPALKNGEVDIIAAG-LSQSEERLKDFRAGPAYYYVSQQVVYKKGDWRPRSFK 144
             +   L  AL  GE D++A G L   +   K   + P    V   +V  KG+ R    +
Sbjct: 98  KAK-DQLLGALARGEGDLVAPGELLDVKAAHKISASDPIVSDVPLWLVGVKGERRFTKLE 156

Query: 145 QLVERQQTLLKDNPELAFFSVVDDSHFEHTLLAKQQKYPDFQFHVDSNSDVNDLLKKVSQ 204
           QL  R   L   +      S V+        LA  ++ P     VD    V D+L+ V  
Sbjct: 157 QLSGRTLALTTGSAAADAISQVNQK------LALHKQPPVKVEWVDPTLAVEDVLEMVQA 210

Query: 205 GELLFTMADSVEVSLSQRIYPELAAAFELTEDQPIS--WFIRRSDDESLYALMIEFFGNL 262
           G    T+ +        +I P+L    ++   +P    WF+R+  D S+    I+ F  L
Sbjct: 211 GIFHLTIVEKPIAERWSKILPKLRFDKQVAISEPGDEYWFVRQ--DASMLRASIDRF--L 266

Query: 263 KQSGYLASLEEKYIGHIGAFDYVDTRAFIRALDTRLPRWTPLFQKYSAE--FDWRLVAAL 320
           K     A  +  +   I    Y       R    RL +  P+ QK++ E   DW  +AAL
Sbjct: 267 KTYRTPADQDVAF-QRIYRRLYQVRNPLARVDRQRLEKLRPVLQKHAREQGMDWLNLAAL 325

Query: 321 AYQESHWNPYAKSPTGVRGLMMLTLPTARSVGVSDRLDPEQSIRGGVEYLRRMMER--VP 378
           A++ES  +P A++  G  GLM +T   A+ VGV++    + +++ G  YL  +  +    
Sbjct: 326 AFKESALDPGARNSGGPTGLMQITPSAAQRVGVNNIESLDSNVQAGARYLAMIRRKFFAS 385

Query: 379 DSISEHEKIWFALASYNIGYGHMMDARRLTKSQGADPDSWADVKDRLPQLQQKKYFTQTR 438
             ++E E++ F LA+YN+G   +   R   K +G +P+ W    +R+   Q         
Sbjct: 386 PKLNERERMAFVLAAYNMGPERVQGMRTEAKRRGLNPNQWFFQVERIAMEQV-------- 437

Query: 439 YGYARGDEARNYVENIRRYY 458
                G    +YV ++ +YY
Sbjct: 438 -----GMGGVSYVNSVNKYY 452