Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

 Score =  186 bits (471), Expect = 1e-51
 Identities = 132/375 (35%), Positives = 182/375 (48%), Gaps = 74/375 (19%)

Query: 1   MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDA 60
           M  +D+Y++LGV   A E+ IK AY++LA KYHPD  S +  A EKFKE  EAYE+L DA
Sbjct: 1   MDFKDYYKILGVEPTADEKAIKAAYRKLARKYHPD-VSKERDAEEKFKEANEAYEVLGDA 59

Query: 61  QKKAAYDQ---YG--HAAFEQGAGGF----GGGGFGGGGADFGDIFGDVFGDIFGGGRRG 111
           QK+A +D+   YG  H    Q   G+    GGGGF GG  DF D F  +FG    GG   
Sbjct: 60  QKRAEFDEIRKYGGQHGRPFQAPPGWESRGGGGGFEGG--DFSDFFSSIFGGRSAGGNPF 117

Query: 112 GGPRAQ------RGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQT 165
           GG R Q      RG D+   + + LEE +   SK+I                        
Sbjct: 118 GGARQQQRSAGRRGQDVELELAVFLEETLSKESKQIS----------------------- 154

Query: 166 CGTCHGHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGV 225
                           F V QT                   GQ     TKTLNV+IPAGV
Sbjct: 155 ----------------FQVPQT----------------NAMGQRTGFTTKTLNVRIPAGV 182

Query: 226 DTGDRIRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEV 285
             G+RIRL G+G  G  G   GDL++ + +  H +F+ +G++L   VP++   AALG +V
Sbjct: 183 TDGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLIITVPLAPWEAALGAKV 242

Query: 286 EVPTLDGRVSLKVPAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETPVNLSARQKEL 345
            VPTLDG+++L +  ++Q+G+  R+ GKG+   +    G+L  +L V  P       +EL
Sbjct: 243 AVPTLDGKINLTIRPDSQSGQRLRVPGKGLAN-KQGERGNLYAQLKVVMPPASDESAREL 301

Query: 346 LKEFEESCGGEAATK 360
             +  E       T+
Sbjct: 302 WTKLSEKAAFNPRTQ 316