Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., Curved DNA-binding protein from Pseudomonas sp. RS175

 Score =  148 bits (373), Expect = 2e-40
 Identities = 116/344 (33%), Positives = 161/344 (46%), Gaps = 67/344 (19%)

Query: 1   MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDA 60
           M  +D+Y++LGV   A +  IK AY++LA KYHPD  S +  A  KFK+V EAYE L  A
Sbjct: 1   MDFKDYYKILGVEPTADDSTIKAAYRKLARKYHPD-VSKEKDAETKFKDVSEAYEALKSA 59

Query: 61  QKKAAYD---QYG-HAAFEQGAGGF-GGGGFGG-GGADFGDIFGDVFGDI---FGGGRRG 111
            K+A YD   +YG H    QG  G+   GGFGG    DF D F  +FG+    FGGG + 
Sbjct: 60  DKRAEYDDLRRYGQHGQPFQGPPGWQSRGGFGGQDTGDFSDFFSSIFGNRGSGFGGG-QS 118

Query: 112 GGPRAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCHG 171
           G    +RG D+   + + LEE +   SK+I      H      + A +  S  T      
Sbjct: 119 GRSAGRRGQDVELELPIFLEETLSNESKKISYQVPQH------NAAGQHVSNTT------ 166

Query: 172 HGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDRI 231
                                 K   +K P  V  G                     +RI
Sbjct: 167 ----------------------KSLNVKIPLGVTDG---------------------ERI 183

Query: 232 RLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTLD 291
           RL G+G  G  G   GDLY+ +    H  F+ +G +L   +P++    ALG EV VPTL 
Sbjct: 184 RLKGQGAPGIGGGANGDLYLTIRFAPHPKFDVEGQDLIITLPLAPWELALGTEVAVPTLT 243

Query: 292 GRVSLKVPAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETP 335
           G+++LKVPA +Q G+  R +G G++  ++   G L V+L    P
Sbjct: 244 GKINLKVPAGSQNGQRMRAKGHGLRN-KAGERGYLFVQLKAVMP 286