Pairwise Alignments

Query, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK (NCBI) from Escherichia coli BW25113

 Score =  157 bits (398), Expect = 3e-43
 Identities = 115/337 (34%), Positives = 156/337 (46%), Gaps = 63/337 (18%)

Query: 1   MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDA 60
           M  +D+Y ++GV      + IK AY+RLA KYHPD  S +  A  +FKEV EA+E+L+D 
Sbjct: 1   MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-SKEPDAEARFKEVAEAWEVLSDE 59

Query: 61  QKKAAYDQ-YGHAAFEQGAGGFG-GGGFGGGGADFGDIFGDVFGDIFGGGRRGGGPRAQR 118
           Q++A YDQ + H    Q    F  G G      DF DIF  +FG      R+     A R
Sbjct: 60  QRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQ---HARQSRQRPATR 116

Query: 119 GSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCHGHGQVQMR 178
           G D+   + + LEE +    + I     V+                              
Sbjct: 117 GHDIEIEVAVFLEETLTEHKRTISYNLPVY------------------------------ 146

Query: 179 QGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDRIRLSGEGE 238
             F  ++Q  P                         KTLNVKIPAGV  G RIRL G+G 
Sbjct: 147 NAFGMIEQEIP-------------------------KTLNVKIPAGVGNGQRIRLKGQGT 181

Query: 239 AGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTLDGRVSLKV 298
            GE G P GDL++ +H+  H +F+  G +L   VPVS   AALG +V VPTL   + L +
Sbjct: 182 PGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTI 241

Query: 299 PAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETP 335
           P  +Q G+  R++GKG+  V     GDL   L +  P
Sbjct: 242 PPGSQAGQRLRVKGKGL--VSKKQTGDLYAVLKIVMP 276