Pairwise Alignments

Query, 635 a.a., molecular chaperone DnaK from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI) from Escherichia coli BW25113

 Score =  255 bits (652), Expect = 3e-72
 Identities = 185/590 (31%), Positives = 291/590 (49%), Gaps = 66/590 (11%)

Query: 5   IGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTDGE-TLVGQPAKRQAVTNPQN 63
           IGIDLGTTNS +AV      ++I N  GE  TPS+I+  +    LVG+PA  +  ++P  
Sbjct: 8   IGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNHILVGKPAVSRRTSHPDK 67

Query: 64  TLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVLKKMK 123
           T    KR +G                       +   W         AP++S+ VL+ +K
Sbjct: 68  TAALFKRAMG-----------------------SNTNW-RLGSDTFNAPELSSLVLRSLK 103

Query: 124 KTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKQ 183
           + AE+FL  P+   VI+VPAYF+D QR+ T+ A  +AGL   R+INEPTAAA+AYGL  Q
Sbjct: 104 EDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHTQ 163

Query: 184 GGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVDEF 243
              R++ V+DLGGGTFD++++E          EV ++ GD  LGGEDF     + LVDE 
Sbjct: 164 QNTRSL-VFDLGGGTFDVTVLEY----ATPVIEVHASAGDNFLGGEDF----THMLVDEV 214

Query: 244 KKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAK 303
                  L+   +A   L E+   A      A +     P         +    +    +
Sbjct: 215 -------LKRADVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENE 267

Query: 304 LEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKEPRKD 363
           LE L   L+ R   P++ AL DA L  + I  ++LVGG ++MP+VQ+     FGK P + 
Sbjct: 268 LEDLWLPLLNRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQS 327

Query: 364 VNPDEAVAVGAAVQGG--VLAGEVKDVLLLDVTPLSLGIET----MGGVMTKLIEKNTTI 417
            +P   VA+GAA+Q    + + ++++V+L D+ P SLG+E     + G+ + +IE+NTT+
Sbjct: 328 YDPSTIVALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTV 387

Query: 418 PTKANQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPR--GMPQIEVIF 475
           P    + +ST    Q ++T++V QGE  +   N  +  F++    P  +      I++ F
Sbjct: 388 PVSRVETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDV----PLKKTGAYQSIDIRF 443

Query: 476 DLDADGILHVSAKDKQTGKEQKITIQASGGLSDAEIEKMVQEAEANKEADKKFEELATAR 535
             D +G+L V    +    + ++   +   LS  +IE+      A K   +         
Sbjct: 444 SYDINGLLEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPR--------- 494

Query: 536 NQADQMIHATRK-QITEAGEALPADEKAKIETAINELETAKKGEDKAEID 584
              D +I+ T K ++ E       DE+ +I   I + + A +  D A +D
Sbjct: 495 ---DMLINRTFKAKLEELWARALGDEREEIGRVITDFDAALQSNDMARVD 541