Pairwise Alignments

Query, 161 a.a., SsrA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 158 a.a., tmRNA-binding protein SmpB from Variovorax sp. SCN45

 Score =  154 bits (390), Expect = 5e-43
 Identities = 78/161 (48%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 1   MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60
           M  KK +T   S+ IA NKKA + YF E+ FEAGM L+GWEVKSLR+GK  + + YV I+
Sbjct: 1   MATKKQDT---SSRIADNKKAAYNYFFEERFEAGMVLEGWEVKSLREGKVQLTDGYVVIR 57

Query: 61  DGEAFISGMTIIPLQQASTHVVANPTRIRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120
           +GE F+ G  I PL+ ASTHV  +  R +KLLL + E+  L G++ ++G TL  L+L+W 
Sbjct: 58  NGELFVVGCQINPLKSASTHVNPDSVRTKKLLLKKDEIRRLIGKVEQKGYTLVPLNLHWK 117

Query: 121 RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMKSALR 161
              VK +I +AKGK  HDKR+ +K++E +R+ +R MKS  R
Sbjct: 118 AGKVKCEIALAKGKAEHDKRDTIKDREGKREVERAMKSRNR 158