Pairwise Alignments

Query, 161 a.a., SsrA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 160 a.a., tmRNA-binding protein SmpB from Sphingobium sp. HT1-2

 Score =  132 bits (331), Expect = 4e-36
 Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 2/159 (1%)

Query: 1   MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60
           M + +  T      +A N++AR +YFIED FEAG+ LQG EVK+LR G+ NIAESY  +K
Sbjct: 1   MARPRPATFDKKKIVAENRRARFDYFIEDVFEAGIALQGTEVKALRGGEGNIAESYAEVK 60

Query: 61  DGEAFISGMTIIPLQQASTHVVANPTRIRKLLLSRRELDNLFGRINREGMTLTALSLYW- 119
             + F+     IP           P R+RKLLL  RE++ +   ++R+GMTL  L +Y+ 
Sbjct: 61  GNQVFLVNSN-IPEYSHGNRENHEPKRVRKLLLHEREIEKMHSAVSRKGMTLVPLMVYFN 119

Query: 120 SRSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMKS 158
           S+   K+++ +AKGK+ HDKR+ +KE++W+R + R+MK+
Sbjct: 120 SQGRAKVELALAKGKQNHDKRDTIKERDWKRDQQRIMKA 158