Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  205 bits (522), Expect = 2e-57
 Identities = 124/405 (30%), Positives = 198/405 (48%), Gaps = 15/405 (3%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           L+D  ++ +KP +K   LFDG GL L + P+G K W   Y     GK   LS G YPD  
Sbjct: 3   LSDATVRKAKPSDKPQRLFDGGGLYLEVAPSGGKWWRLKYR--FGGKEKRLSLGTYPDTG 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L  AR+   +A++L+AQG+DP   RK ++    +   ++FE V ++W A+K+ + T    
Sbjct: 61  LADARERRDAARKLLAQGVDPGVQRKAEKAAGVDRAANSFEVVAREWLAVKKPEWTAGQF 120

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
                 LE H FP I   PV  I   EI  L   +  +G +E   RL  +L+ V  FA  
Sbjct: 121 AKECGRLENHAFPRIGALPVADIGVGEIRPLFAYLIKQGHIEQAHRLRHQLSRVFRFAVA 180

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALT-PAELPELMSAIANASIKRTTRCLLEWQLHTM 246
                 +P   ++        +N   +T P  + ELM AI   +     +C L+      
Sbjct: 181 TERASRDPAADLRDTLPSRNPQNHPTITDPERVGELMRAIDGFTGTLPVQCALKLAPLWF 240

Query: 247 TRPAEASGARWD--EINWEEKVWTIPAERMKKRR---------EHRIPLTEQMLALLEVM 295
            RP E   A W   +++ E   +T+P    K ++          H +PL+ Q L +L  +
Sbjct: 241 CRPGEIRMAEWTHFDLDGEHPSYTVPPMNRKLKKAAKENPSTPPHIVPLSRQALEILREL 300

Query: 296 KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPD 355
           + ++GH  ++FP  R PK+  +    N AL R+G+ G +  HG R +A T L E G++P+
Sbjct: 301 RQLTGHGRYLFPGARDPKRHMSDGAVNAALARIGYKGIITGHGFRHMARTLLGELGWNPE 360

Query: 356 LVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGS 400
            +E  L+H +   V   YN+  +L  R+ +M  W+++++    GS
Sbjct: 361 ALERQLSHKEPG-VAGVYNKAQHLPERRKVMQAWADYLDSLRAGS 404