Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Prophage integrase IntS from Xanthobacter sp. DMC5

 Score =  233 bits (594), Expect = 8e-66
 Identities = 137/396 (34%), Positives = 221/396 (55%), Gaps = 11/396 (2%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LTD  IKA+KP+EK Y L D +GL L + P G K W   Y     GK+  L+FG Y  ++
Sbjct: 2   LTDTAIKAAKPKEKPYKLSDAEGLHLLVTPQGGKLWRLAYR--FGGKQRQLTFGSYKYVT 59

Query: 68  LLQARKSLLSAKELIAQGIDPQDD---RKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTP 124
           L +AR+    AK L+A G+DP  +   RK +Q+  +E  ++TF  V  ++    + +   
Sbjct: 60  LAEARERRTEAKRLLASGVDPGANIKSRKAEQRAAEEAAQNTFGVVASEFIEKIRKEGRA 119

Query: 125 DYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNF 184
              ++    L   I   ++D+P+  ITA E++++L+ +EAKG+ E  +R    +  V+ +
Sbjct: 120 PATMEKAEWLLRTIAAPLADRPISEITAREVLDVLRHVEAKGNHEAARRARSTIGRVLRY 179

Query: 185 ATNCGLIQANPLTGIKAAFKKPKKENMAALTPAE-LPELMSAIANASIKR-TTRCLLEWQ 242
           A      + +  + +K A   P  ++ AA+T  + L +LM+AI   +  + TT   L+  
Sbjct: 180 AIATDRAERDVTSDLKGALIAPPVQHRAAITEEKALGKLMAAIYGWNRGQPTTVAALKLL 239

Query: 243 LHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS--G 300
                RP E   ARW EI+ E+ VW IPA R K RR+HR PL  Q + +L+ ++P++  G
Sbjct: 240 AMLALRPGEVRAARWSEIDLEKAVWIIPAGRTKMRRQHRTPLPRQAVEVLKALRPVTDRG 299

Query: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGF-AGRLVSHGLRSLASTTLNE-QGFDPDLVE 358
               +F +  +  KP +  T N+A++R+GF A  + SHG R+  +T  NE + + PD +E
Sbjct: 300 PDSLVFHATTSVLKPISENTLNVAIRRLGFTASEMTSHGFRAAFATLANESRKWHPDAIE 359

Query: 359 SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE 394
             LAHV+ N VR AY R ++ E R  +M WW++H++
Sbjct: 360 RQLAHVEGNNVRRAYTRGEHWEERITLMQWWADHLD 395