Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  143 bits (360), Expect = 1e-38
 Identities = 116/407 (28%), Positives = 197/407 (48%), Gaps = 26/407 (6%)

Query: 1   MAKNTVKLTDKEIKA-SKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLS 59
           M + T +LT + +   +KP        DG  L L I  NG ++WIF Y     GK+  + 
Sbjct: 1   MGRETKRLTARTVATLTKPGRHA----DGGNLYLSISTNGGRRWIFLYRWA--GKQLEMG 54

Query: 60  FGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ 119
            G   D+SL +AR+   +A+  +A+G++P D R+ ++ V     E   + + +D   I+ 
Sbjct: 55  LGSARDVSLARARELADAARAQLAEGVNPLDARRAERVVIPTFGEFA-DGLVQD---IQS 110

Query: 120 NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN 179
                 +      +LE++    +    + ++T  +++ +L+P+  +   ET  RL  R+ 
Sbjct: 111 GFRNEKHRWQWQHTLEVYAAA-LRPIQIDSVTTEDVLGILQPLW-QTKQETASRLRGRIE 168

Query: 180 EVMNFATNCGLIQA-NP------LTGIKAAFKKPKKENMAALTPAELPELMSAIANASIK 232
            V++ A   GL    NP      L  +    +K ++ +  AL  A +P     +A    +
Sbjct: 169 RVLDAAKAKGLRAGDNPARWRGHLDALLPKRQKLQRGHHPALPHASVPAF---VAELQKR 225

Query: 233 RTTRCL-LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLAL 291
           R T  L LE+ + T  R  E  GA W EI+ + K+WT+PA RMK  +EHR+PL+++ L +
Sbjct: 226 RATAALALEFAILTAARSGEVLGATWVEIDRKAKIWTVPAVRMKAGKEHRVPLSDRALEI 285

Query: 292 LEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE-Q 350
           L+          F+FP  R   KP ++    M L+       +  HG RS       E  
Sbjct: 286 LDEAAAQRTDGGFVFPGPR-KGKPLSNMAMAMLLRVRMKRPEITVHGFRSSFRDWAGECT 344

Query: 351 GFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAA 397
            F  ++ E+ALAH   ++V  AY R D LE+R+ +M  W++++   A
Sbjct: 345 SFPREVAEAALAHTVGDEVERAYRRADALEKRRKLMEAWAKYVTGGA 391