Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  144 bits (364), Expect = 4e-39
 Identities = 126/404 (31%), Positives = 191/404 (47%), Gaps = 25/404 (6%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           MA+   +LT + + + K   +     DG  L L+I P GSK W+F + R  +GKR  +  
Sbjct: 1   MAREMNRLTARTVASLKDPGRYP---DGGNLYLQIGPTGSKAWLFMFKR--DGKRREMGL 55

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK-Q 119
           G   D++L  AR     A+ ++A G DP   R+    V KE           D    K  
Sbjct: 56  GSLNDVTLAAARMKADEARRIVADGGDPFAVREAALAVRKEAEAAPTFGAFADALITKLA 115

Query: 120 NDVTPDYALDIWR-SLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL 178
           +    +  +  W+ +L       I D  +  ITA +I+++L+PI    + ET  RL  R+
Sbjct: 116 HGFRNEKHVAQWQMTLGPTYCSAIRDMKIADITAVDILKVLEPIWQDKN-ETASRLRGRI 174

Query: 179 NEVMNFATNCGLIQA-NP------LTGIKAAFKKPKKENMAALTPAELPELMSAIANASI 231
             V++ A   GL    NP      L    +  +K ++ + AAL  AE+P  + A+  A  
Sbjct: 175 ERVLDAAKVEGLRTGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVAL-RARP 233

Query: 232 KRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLAL 291
               R L E+ + T  R  E   A W EI+++  VWT+PA RMK  REHR+PL++  +A+
Sbjct: 234 AMAARAL-EFAILTAARSGEVLSATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAIAV 292

Query: 292 LEVMKPISGHRD----FIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLR-SLASTT 346
           L   +P     D    F+FP  R P +P ++    M L+R         HG R S     
Sbjct: 293 LREAEPHRRGDDPETAFLFPGLR-PMRPLSTMAMEMLLRRQKQV--FTVHGFRSSFRDWA 349

Query: 347 LNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWS 390
             E  F  ++ E+ALAHV  +    AY R D LE+R+ +M  W+
Sbjct: 350 AEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDLMTAWA 393