Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  435 bits (1119), Expect = e-126
 Identities = 217/409 (53%), Positives = 281/409 (68%), Gaps = 3/409 (0%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           MA N   LT ++I+ +KP++K Y L DG  L   ++P+ S+ W F Y RP   K   LSF
Sbjct: 1   MANN---LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSF 57

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120
           G YPD+SL +AR+  L A++ +A GIDPQ  ++ Q+         TF+ V + W A K+ 
Sbjct: 58  GTYPDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEG 117

Query: 121 DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE 180
            +        WR LEL+ FP +   PV  +TAP  I  L+PIE++G LETVKR  Q +NE
Sbjct: 118 QIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNE 177

Query: 181 VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE 240
           +MN+A N G+I ANPL GI+  FKK K  +M AL P E+ +L+  +A A+I+  TR L+E
Sbjct: 178 IMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIE 237

Query: 241 WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG 300
           WQLHTM RP EASGARW+EI+   K+W IP ERMK  REH +PLT Q LA+LE +KPISG
Sbjct: 238 WQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISG 297

Query: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA 360
           HR+FIFPS R PK P +S+TAN AL RMGF  R  +HGLR+LASTTLNEQGF+PD++E+A
Sbjct: 298 HREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAA 357

Query: 361 LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQL 409
           LAH D NQ+R AYNRTDYL+ R+ +M WWSEHIE+++ GS SV GT  L
Sbjct: 358 LAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGTGYL 406