Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Integrase from Sphingobium sp. HT1-2

 Score =  220 bits (560), Expect = 7e-62
 Identities = 133/389 (34%), Positives = 201/389 (51%), Gaps = 5/389 (1%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LT  +I A KPREK Y + D  GL + + PNGS  W   +    +G    ++ G YPD+ 
Sbjct: 2   LTTIQINALKPREKPYKVADAKGLYILVNPNGSLLWRVKFR--FHGIEKKMALGRYPDVG 59

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L +AR+    A+E +  G+DP   R + +   +     TF  VT ++    + +      
Sbjct: 60  LKEARQKRDEAREQLEGGVDPLAARIQAKIEAEAAARTTFRVVTDEFIEKMEREGKAPAT 119

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
           L   R     + P I  +P+  I+A E++  LK  E KG  E+  R       V  +A  
Sbjct: 120 LKKMRWFRDELQPTIGHRPIAEISAHELLNALKRFERKGHFESAIRARSFSGRVFRYAVA 179

Query: 188 CGLIQANPLTGIKAAFKKPK-KENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM 246
               Q NP   ++ A   PK K + A L PA++ EL+ AI     K  TR  L+   H  
Sbjct: 180 TLRAQHNPADILRGALITPKVKHHAALLEPAKVGELLRAIDGYGGKIETRIALQLAPHVY 239

Query: 247 TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF 306
            RP E   A W EI+++  VW +PA R K R+ H +PL+ Q++ LL  ++ +     ++F
Sbjct: 240 LRPGELRKAEWGEIDFDAAVWRVPAGRTKMRKPHAVPLSTQVVTLLRELRAMGNLGSYLF 299

Query: 307 PSDRAPKKPCNSQTANMALKRMGFA-GRLVSHGLRSLASTTLNEQG-FDPDLVESALAHV 364
           P++    KP    T N+AL+R+GF    + SHG RS+AST LNE G + PD +E +LAH 
Sbjct: 300 PANSTFLKPICENTLNVALRRLGFTRDEMTSHGFRSIASTLLNESGLWHPDAIERSLAHR 359

Query: 365 DDNQVRSAYNRTDYLERRKPMMCWWSEHI 393
           + + VR+AY+R  + E R  M  WWS+++
Sbjct: 360 ERDSVRAAYHRGAHWEERVRMAQWWSDYL 388