Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

 Score =  241 bits (616), Expect = 2e-68
 Identities = 136/390 (34%), Positives = 220/390 (56%), Gaps = 9/390 (2%)

Query: 13  IKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQAR 72
           +  +KPREK Y L DG GL L + P G + W  NY    +GK   ++ G++P I+L +AR
Sbjct: 8   LSKAKPREKPYKLADGHGLYLLVTPQGGRYWRMNYR--FDGKAKTMAMGVFPLITLAEAR 65

Query: 73  KSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHT--FENVTKDWFAIKQNDVTPDYALDI 130
           +    A++L+A G DP   RK  +   +E  E T  F  V ++W A ++ +   D  +  
Sbjct: 66  EKREDARKLLAAGSDPCAKRKEIEA--QEAFEATTGFRIVAEEWLAKREREGLGDITIGK 123

Query: 131 WRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGL 190
            + L    +P + D+ +  IT+ E++ +L+ +E +G  ET +RL      V  +A   G 
Sbjct: 124 IKWLLEFAYPSLGDRKIGEITSMELLAVLRQVEGRGRHETARRLRSVCGRVFRYAIATGR 183

Query: 191 IQANPLTGIKAAFKKPKKENMAALTPAE-LPELMSAIANASIKRTTRCLLEWQLHTMTRP 249
            + +    ++ A   PK +++AA+T ++ +  L+ AI        T+  L    H   RP
Sbjct: 184 AEHDLSANLRDALTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRLAPHVFVRP 243

Query: 250 AEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSD 309
            E   A W EI++E+ +W+IPAE+MK RR HR+PL+ Q L +L  ++ ++G   F+FP  
Sbjct: 244 GELRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQSLTILSSIREVTGAGKFVFPGF 303

Query: 310 RAPKKPCNSQTANMALKRMGFAG-RLVSHGLRSLASTTLNEQG-FDPDLVESALAHVDDN 367
           ++ K+P +    N AL+R+G++G  + SHG R++AST LNE G + PD +E  LAH + +
Sbjct: 304 QSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGKWHPDAIERQLAHAEAD 363

Query: 368 QVRSAYNRTDYLERRKPMMCWWSEHIEEAA 397
            VR AY R +Y E R  MM  WS++++E A
Sbjct: 364 AVRRAYARGEYWEERVVMMQAWSDYLDELA 393