Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Integrase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  150 bits (379), Expect = 7e-41
 Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 18/371 (4%)

Query: 35  IKPNGSKQWIFNYYRPTNGKRANLSFGMY--PDISLLQARKSLLSAKELIAQGIDPQDDR 92
           + P G+  + F+Y    NG+R  L+ G Y    ISL  AR+ LL AK+ +AQG  P  ++
Sbjct: 5   VSPTGTVTFRFDYR--LNGRRETLTIGRYGPAGISLAMAREKLLDAKKAVAQGKSPAHEK 62

Query: 93  KRQQQVHKEIHEHTFENVTKDWFA-IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAIT 151
           +R+++  +      F ++T  W A  +  D T      I   ++  I P   ++ +  IT
Sbjct: 63  QREKR--RLTAAKNFGDMTAQWLASARMADSTRAMRKSI---VDRDILPAFQNRLLNEIT 117

Query: 152 APEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENM 211
           A ++  L   ++ +G+  T   +   + +V  FA   G    NP   + AA         
Sbjct: 118 ADDLRALCGKVKGRGAPATAVHVRDIVKQVYAFAILHGEKVDNPAADVGAASIATFVPKD 177

Query: 212 AALTPAELPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPA 271
            AL+P E+  +   + + +   T R  L   L T+ R +E   A WDE+++E   WTIP 
Sbjct: 178 RALSPLEIRLMSRQMESVATYPTIRLALRMILLTLVRKSELIEATWDEVDFETATWTIPK 237

Query: 272 ERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP----SDRAPKKPCNSQTANMALKR 327
           +RMK R  H + L+ Q L +L  +   +    F+ P    SDR       ++   +  +R
Sbjct: 238 QRMKGRNPHVVYLSRQALDILVALHTCAAGSKFVLPSRYDSDRCMSHATLNRVTQIVAQR 297

Query: 328 MGFAG----RLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRK 383
              AG        H LR   ST LNE GF+ D +E  LAH +    RS YN+ +Y E+R+
Sbjct: 298 AKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRSSRSIYNKAEYAEQRR 357

Query: 384 PMMCWWSEHIE 394
            M+  W+  ++
Sbjct: 358 HMLQEWASMVD 368