Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Integrase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  167 bits (423), Expect = 6e-46
 Identities = 114/419 (27%), Positives = 194/419 (46%), Gaps = 24/419 (5%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMY--PD 65
           LTD  +K  KP+   Y + D DG+ + + P G+  + ++Y    NG+R  L+ G Y    
Sbjct: 2   LTDTALKNLKPKAAPYKVTDRDGMYVTVSPVGTVTFRYDYRM--NGRRETLTIGRYGADG 59

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWF-AIKQNDVTP 124
           +SL +AR+  + A+  ++ G  P  +++R+++   E     F+  T  W    +  D T 
Sbjct: 60  LSLARARERCIDARRAVSDGKSPAQEKQREKRRLSEAKN--FQEFTDRWAKGARMADSTR 117

Query: 125 DYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNF 184
                I   L+  I P   ++ +  IT+ ++ +L   ++ +G+  T   +   + ++  F
Sbjct: 118 SMRKSI---LDRDILPAFKNRLLTEITSDDLRDLCNKVKGRGAPATAVHVRDIVKQIYGF 174

Query: 185 ATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLH 244
           A   G   ANP   +  +          AL+P E+  +   +   +   T R  L   L 
Sbjct: 175 AILHGEKVANPADDVGPSSIATFVPKDRALSPVEIRLMHQQLETVASYPTIRLALRLILL 234

Query: 245 TMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDF 304
           T+ R  E   A W+EI++E  +WTIP ERMK  + H + L++Q L ++  ++  +G   F
Sbjct: 235 TLVRKGELIHATWNEIDFENALWTIPKERMKGSKAHNVYLSQQALDIMVALRTCAGGSRF 294

Query: 305 IFPSDRAPKKPCNSQTANMALKRMGFAGR--------LVSHGLRSLASTTLNEQGFDPDL 356
           + PS   P K  ++ T N   + +    +           H LR   ST LNE GF+ D 
Sbjct: 295 VLPSRYEPDKCMSNATLNRVTQLVAARAKEKGLPLDGFTVHDLRRTGSTILNELGFNSDW 354

Query: 357 VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPP 415
           +E  LAH D    R  YN+ +Y E+R+ M+  W++ I+        V G       LPP
Sbjct: 355 IEKCLAHEDGRSSRGVYNKAEYAEQRRHMLQEWADMID------AWVAGKSHTPTLLPP 407