Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Phage integrase, Phage P4-associated from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  304 bits (779), Expect = 2e-87
 Identities = 153/336 (45%), Positives = 215/336 (63%), Gaps = 2/336 (0%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LT+ EI  +KPR  +Y L DG+GL L +K +G K W F YY P   KR   S G YP ++
Sbjct: 8   LTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVT 67

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ--NDVTPD 125
           L  AR++    + L+ QGIDP+       +  +  +E T E V + W   K+  +D++ D
Sbjct: 68  LAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSED 127

Query: 126 YALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFA 185
           +A D+WRSLE+H+FP + + PV  I    + E L P+E +G LET++R+  RLNE+  FA
Sbjct: 128 HAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFA 187

Query: 186 TNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHT 245
            +  LI+ NP   + A FKKPKK+NM AL P+EL  LM A+ NASI++ TRCL+EW+L T
Sbjct: 188 ISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLT 247

Query: 246 MTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFI 305
             RP EA  ARW +I+ ++  W IP   MK  R H +PL++Q L +L++M+P+S HR ++
Sbjct: 248 WVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWV 307

Query: 306 FPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRS 341
           FPS R P +  + QTAN AL RMGF G LV+HG+RS
Sbjct: 308 FPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRS 343