Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., CP4-57 prophage; integrase (NCBI) from Escherichia coli BW25113

 Score =  446 bits (1148), Expect = e-130
 Identities = 219/410 (53%), Positives = 293/410 (71%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60
           MA+ T  LTD EIKA+KP++ +Y L+DGDGL L IK +GSK W F YYRP   +R   SF
Sbjct: 1   MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60

Query: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120
           G YP +SL  ARK    +K L+A+ IDPQ+ +K Q +  +E   +TF  V + W+ +K+ 
Sbjct: 61  GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT 120

Query: 121 DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE 180
            VT DYA DIWRSLE  IFP I D  +  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct: 121 SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE 180

Query: 181 VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE 240
           VM +A N GLI A P   I  AF+KP+K+NM ++ P +LP+LM  +  ASI  +TRCL  
Sbjct: 181 VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM 240

Query: 241 WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG 300
           WQL T+TRPAEA+ ARWDEI++    W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct: 241 WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG 300

Query: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA 360
            R+FIFPS   P +P NSQT N ALKR G  G LVSHGLRS+AST LNE+GF PD++E+A
Sbjct: 301 GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA 360

Query: 361 LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK 410
           LAHVD N+VR AYNR+DYLE+R+PMM WW++ ++ A  GS+ +T   +++
Sbjct: 361 LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLTHLSKIR 410