Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score =  207 bits (528), Expect = 4e-58
 Identities = 132/397 (33%), Positives = 214/397 (53%), Gaps = 11/397 (2%)

Query: 8   LTDKEIKASKPREKEYNLFDG--DGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPD 65
           LT K I A++P++K Y L D    GL L + PNGSK W F Y+   N +    + G+YP 
Sbjct: 6   LTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYW--LNKREFLQAIGVYPL 63

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPD 125
           I+L +AR+    ++ LIA GI+P +  ++++ +        F+ V +DWFA +    +  
Sbjct: 64  ITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSES 123

Query: 126 YALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFA 185
           YA  +  +LE  ++P +  + +  ITA +++ LL+  E + + E  ++L +R+ E+  FA
Sbjct: 124 YAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKE-RTAPEQARKLRRRIGEIFKFA 182

Query: 186 TNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANA-SIKRTTRCLLEWQLH 244
               L+  NP+  +  A K  +  + A +  +E+P    A+  A S++  T   L   + 
Sbjct: 183 VITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRL--LIL 240

Query: 245 TMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDF 304
           T  R AE    RW+ IN E+   T+PAE MK RR H +PL+ Q + LL+     SG+  F
Sbjct: 241 TALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAF 300

Query: 305 IFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDPDLVESALAH 363
           +FP  R   KP ++     AL+R+G+      HG R+  ST LNE G + PD +E  LAH
Sbjct: 301 VFPG-RFMDKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAH 359

Query: 364 VDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGS 400
           V    +R  YN+  YL++R+ MM  +++ I+    G+
Sbjct: 360 VPKG-IRGVYNQAAYLKQRRAMMQDYADAIDSILAGN 395