Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

 Score =  202 bits (515), Expect = 1e-56
 Identities = 117/392 (29%), Positives = 202/392 (51%), Gaps = 15/392 (3%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LT K+I+A+KP+EK Y L DG+GL L +  +G K W   Y    +GK   L+ G YP ++
Sbjct: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L +AR    +A++ I+ GIDP   +K         + ++F  + K+W+  K+   +  YA
Sbjct: 60  LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
            ++ +  +  I P I    ++ I   +++E+++  E +G++E   +  +R  EV  +A  
Sbjct: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            G  + NP   +  A K  +K+N   L   ++P    A+A  S    +    +   +T  
Sbjct: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233

Query: 248 RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALL----EVMKPISGHRD 303
           R  E     W  +++E ++ TI A  MK R+ H +P+++Q++ LL     + KP+S   +
Sbjct: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290

Query: 304 FIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAH 363
           F+F      KKP       + +K++G+ G    HG R   ST +NE  +  D +E  LAH
Sbjct: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350

Query: 364 VDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE 395
            +   VR  YN   YL++R+ MM WW++ ++E
Sbjct: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382