Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  206 bits (524), Expect = 1e-57
 Identities = 134/405 (33%), Positives = 208/405 (51%), Gaps = 25/405 (6%)

Query: 6   VKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPD 65
           + LTD + K +KP EKEY L DG G+ LR+ P G K W   Y     GK+   S G+YP 
Sbjct: 1   MSLTDSKAKNAKPLEKEYKLTDGFGMFLRVTPKGYKYWQMAYR--FEGKQKIFSIGVYPA 58

Query: 66  ISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHT--FENVTKDWFAIKQNDVT 123
           +SL   R+    A+ L+AQGIDP   ++ + +  K   + T  F  V K WF+ K    +
Sbjct: 59  VSLADVRQRRDEARRLLAQGIDPNARKQAEVKELKAKRDKTRSFSIVAKAWFSTKTK-WS 117

Query: 124 PDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMN 183
            DY   +W+ LE ++FP   DK V  +    +   +K +EA G LE   R+ Q +  ++ 
Sbjct: 118 EDYGDSVWKRLETYVFPATGDKDVAELDTGNLPVPVKKVEALGYLEVAMRIQQYIAAILR 177

Query: 184 FATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQL 243
            A    LI+ NP   ++ A +KP  E+  AL   E+P+L+  IA     R T   ++  L
Sbjct: 178 HAVQQKLIRHNPAYDMEGAVQKPHTEHRPALELEEIPQLLKKIAGYKGHRLTILAIQLNL 237

Query: 244 HTMTRPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLAL 291
               R +E   ARW EI+ + K+W IP +R             K +R+H +PL +Q + +
Sbjct: 238 MIFIRSSELRFARWSEIDVKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAMKI 297

Query: 292 LEVMKPIS---GHRD-FIFPSDRAPKKPCNSQTANMALKRMGFAGR--LVSHGLRSLAST 345
           L+ ++ ++   GH D  IF       KP +  T N AL+ MG+  +  +  HG R+L   
Sbjct: 298 LKEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYDTKQDICGHGFRTLDVV 357

Query: 346 TLNEQG-FDPDLVESALAHVDDNQVRSAY-NRTDYLERRKPMMCW 388
            L E G +  D VE  ++H + N VR+AY ++  + ++R+ M+ W
Sbjct: 358 ALIESGLWSEDAVELQMSHKESNSVRAAYTHKARHPDQRRLMLQW 402