Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  169 bits (428), Expect = 1e-46
 Identities = 122/404 (30%), Positives = 199/404 (49%), Gaps = 20/404 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKP-NGSKQWIFNYYRPTNGKRANLSFGMYPDI 66
           LTD + +  KP ++        GL L      G  +W+  Y  P   KR N   G YP+I
Sbjct: 4   LTDTKARHIKPDDRPLPHGGITGLTLHPSSVKGRGKWVLRYVSPVTQKRRNAGLGTYPEI 63

Query: 67  SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY 126
            + +A +   + +E +A G DP + +K + +   ++   TFE   +   A          
Sbjct: 64  GIAEAARMAQAMREQLATGDDPLELKKAEAE---KVVIPTFEAAARQVHAELSPGWKNQK 120

Query: 127 ALDIWRS-LELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFA 185
            +  W S LE + FP +  KP+  IT  ++ E L+P+    + ET  R+ QR++ VM + 
Sbjct: 121 HIKQWLSTLEQYAFPSLGTKPLDRITPADVAETLRPVWLTLA-ETASRVKQRIHAVMQWG 179

Query: 186 TNCGLIQANPLTGIK-----AAFKKPKKENMAALTPAELPELMSAIANASIK-RTTRCLL 239
              G   ANP+  +       A    + E+  A+    +P  ++    +  +   TR LL
Sbjct: 180 WTHGHCVANPVDVVDHLLPVQAGINVRTEHQPAMPWRNVPLYVATKVYSDERYNVTRALL 239

Query: 240 EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS 299
              + T  R  EA G RW E++ ++++W +P ERMK   +HR+PL+ Q +A+LE M+ + 
Sbjct: 240 LIVILTGARSGEARGMRWQEVDLDKRIWIVPPERMKAGIQHRVPLSLQAVAVLEKMQGL- 298

Query: 300 GHRDFIFPSDRAPKKPCNSQTANMALKRMGFA----GRL-VSHGLRSLASTTLNEQGFDP 354
            H + +FPS R  +   +       L++ G      GRL  +HG RS      +EQG   
Sbjct: 299 -HDELVFPSPR-KQIVLSDMVMTTFLRKTGAVSDTPGRLATAHGFRSSFRDWCSEQGISR 356

Query: 355 DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAAR 398
           D+ E ALAH   N+V +AY+RTD LE+R P+M  W++++  A +
Sbjct: 357 DVAERALAHTLKNKVEAAYHRTDLLEQRIPVMQAWADYVFSAVK 400