Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  208 bits (529), Expect = 3e-58
 Identities = 118/390 (30%), Positives = 201/390 (51%), Gaps = 9/390 (2%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LT K+I A+KP++K Y L D +GL L +  +G K W   Y    +GK   L+ G YP +S
Sbjct: 2   LTIKQIDAAKPKDKPYRLLDSNGLYLYVPASGKKVWQLRY--KIDGKEKVLTVGKYPLMS 59

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L +AR     A++ ++ GIDP   +K        + +++F  +  +W+  K+   +  YA
Sbjct: 60  LQEARDKAWLARKDVSVGIDPVKAKKLS------VKDNSFGAIYHEWYEHKKQVWSLGYA 113

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
            ++ R     I P I    +  I   +I+E+++  E +G++E   +  +R  EV  +A  
Sbjct: 114 EELARMFRDDILPMIGGLEINEIEPMKILEVIRRFEERGAMERANKARRRCGEVFRYAIV 173

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            G  + NP   +  A K  +K+N   L   ++P    A+A  S    +R   +   +T  
Sbjct: 174 TGRAKYNPAPDLADAMKGYRKQNYPFLPADQIPAFNRALAGYSGSIVSRIATQILQYTAL 233

Query: 248 RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGH-RDFIF 306
           R  E    +W  +++  +  TI AE MK RR H +P+++Q+++LLE+++PI+     F+F
Sbjct: 234 RTKELRSMQWANVDFATRTITIAAEVMKGRRIHIVPMSDQVISLLEMLRPITAPVSAFVF 293

Query: 307 PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD 366
                 KKP +     + ++++G+ G    HG R   ST +NE  +  D +E  LAH D 
Sbjct: 294 AGRNDKKKPISENAVLLVIRQIGYEGLASGHGFRHQFSTIMNENEWPHDAIERQLAHTDS 353

Query: 367 NQVRSAYNRTDYLERRKPMMCWWSEHIEEA 396
             +R  YN   YLE+R+ MM WW++ ++ A
Sbjct: 354 GSIRGIYNHAQYLEKRREMMQWWADWLDGA 383