Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Integrase from Enterobacter asburiae PDN3

 Score =  266 bits (680), Expect = 8e-76
 Identities = 134/386 (34%), Positives = 216/386 (55%), Gaps = 2/386 (0%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           L D +I+ +KP  K Y L DG GL L I+PNGSK W F Y     GK   +S G+YP I+
Sbjct: 3   LNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFA--GKPKMISLGVYPTIT 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L  AR     A++L+A+G +P + RK Q+   +   E+ FE +  +W  +K    +  YA
Sbjct: 61  LADARSRREDARKLVAEGKNPSEVRKEQKIALQTESENAFEKIATEWHQMKSTKWSAGYA 120

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
            DI  + +  IFP++ ++P+  I   E++ +L+ IE +G+LE ++++ QR +EV  +A  
Sbjct: 121 SDIMEAFQNDIFPYVGERPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA 180

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            G  + NP   + +A +  +  +   L   E+ + + A+ + +  R  +   +  + T  
Sbjct: 181 TGRAEFNPAADLSSALEVHQSNHYPFLKADEITDFLRALDSYTGSRLVQIATKLLMITGV 240

Query: 248 RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP 307
           R  E   A W E + +  +W IPAERMK RR H +PL+ Q L LL  +K ++G+  ++FP
Sbjct: 241 RTIELRAALWSEFDLDNALWEIPAERMKMRRAHLVPLSTQALDLLNELKIMTGNYRYVFP 300

Query: 308 SDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDN 367
               P KP +  + N  +KR+G+ G+L  HG R   ST L+E+G++   +E  LAHVD N
Sbjct: 301 GRNDPNKPMSEASINQLIKRIGYGGKLTGHGFRHTLSTILHERGYESIWIEMQLAHVDKN 360

Query: 368 QVRSAYNRTDYLERRKPMMCWWSEHI 393
            +R  YN   Y+  R+ M+ W+S+ I
Sbjct: 361 NIRGTYNHAQYISNRRVMLSWYSDFI 386