Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., integrase from Escherichia coli ECRC98

 Score =  191 bits (484), Expect = 4e-53
 Identities = 127/396 (32%), Positives = 206/396 (52%), Gaps = 16/396 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKP-NGSKQWIFNYYRPTNGKRANLSFGMYPDI 66
           LTD + +  KP +K        GL L      G  +W+F Y  P   KR N   G YP++
Sbjct: 4   LTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEV 63

Query: 67  SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-IKQNDVTPD 125
           S+ +A ++    +E +A G DP + +K + +   ++   TF +  +   A +      P 
Sbjct: 64  SIAEAARTARIMREQLAAGDDPLEIKKAESE---KVAIPTFADAARRVHAELSPGWENPK 120

Query: 126 YALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFA 185
           +      +LE + FP +  K + +ITA ++ E L+P+    S ET  R+ QR++ VM + 
Sbjct: 121 HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLS-ETASRVKQRIHVVMQWG 179

Query: 186 TNCGLIQANPLTGIKAAFKKPKK---ENMAALTPAELPELMS-AIANASIKRTTRCLLEW 241
              G   ANP+  +     +  +   E+  A+   +LP  ++ ++        TR LL  
Sbjct: 180 WAHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLM 239

Query: 242 QLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGH 301
            + T TR  EA G RW EI++ ++VWTIPAERMK R +HR+PL+ Q + +LE ++ +  H
Sbjct: 240 VILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGL--H 297

Query: 302 RDFIFPSDRAPKKPCNSQTANMALKRMGFA---GRL-VSHGLRSLASTTLNEQGFDPDLV 357
            + +FPS R  +   +    +   K+   +   GR+  +HG RS      +EQG+  DL 
Sbjct: 298 DELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLA 357

Query: 358 ESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI 393
           E ALAH   N+V +AY+RTD LE+R PMM  W++++
Sbjct: 358 ERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV 393