Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase from Escherichia coli ECRC62

 Score =  361 bits (926), Expect = e-104
 Identities = 182/399 (45%), Positives = 254/399 (63%), Gaps = 6/399 (1%)

Query: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN 57
           MAK   KLTD EIK++KP +KE NLFDGDGL LRI P    G K W F Y  P + KR  
Sbjct: 1   MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK 60

Query: 58  LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWF-- 115
           +S G YP ++L +AR        L+A G+DPQ     + +  K   EHT + V + W   
Sbjct: 61  MSLGTYPHLTLAKARALRDENLSLLANGVDPQVHNNNKAKALKSAIEHTLQAVARKWLDE 120

Query: 116 AIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT 175
            +K + ++ D+A DIWRSLE +IFP + D P+K I    + + L PIE +G LET++R+ 
Sbjct: 121 KVKTSGISQDHAEDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRII 180

Query: 176 QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT 235
            RLNE+  +A    LI+ NP   +   F KPKK+NM AL P ELP  ++ + NAS++  T
Sbjct: 181 SRLNEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPTELPRFLTVLNNASVRMET 240

Query: 236 RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM 295
           R L+EWQL T  RP EA   RW +I+ E  +W IPAE MK ++ H++PL+++ L +L++M
Sbjct: 241 RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM 300

Query: 296 KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP 354
           K ISGHR+++FPS +AP    + QTAN A+ RMGF G LV+HG+RS+A T   E G F  
Sbjct: 301 KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT 360

Query: 355 DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI 393
           D++E+ALAH   +++ +AYNR +YL  R  +M WWS+ +
Sbjct: 361 DVLEAALAHSKKDEIIAAYNRAEYLTERVILMQWWSDFV 399