Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., integrase from Escherichia coli ECRC62

 Score =  256 bits (653), Expect = 1e-72
 Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 2/391 (0%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LT ++++ ++P+EK+Y L D  GL L +K  G++ W   Y     GK   L+ G+YPD+S
Sbjct: 3   LTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYR--IAGKEKKLALGVYPDVS 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L +AR     A+++I++G DP + +++++   K    +TF  +  +W   K    +  YA
Sbjct: 61  LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA 120

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
             +  +L+  IFP++  + V  I   E++E+L+ IE +GSLE ++++ Q  N++  +A  
Sbjct: 121 RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA 180

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            G    NP + + +    PK  +   L   ELP  +  +A       TR      L T  
Sbjct: 181 TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTRMATNLLLLTGL 240

Query: 248 RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP 307
           R  E   A W EI+++  +WTIP  RMK RR+H +PL+ Q   +L  +K  SG    +FP
Sbjct: 241 RTIELRSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQATDILLQLKTFSGQYRLVFP 300

Query: 308 SDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDN 367
                 KP +  + NM LKR+G+ GR   HG R   ST L+EQGF+   +E  LAHVD N
Sbjct: 301 GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN 360

Query: 368 QVRSAYNRTDYLERRKPMMCWWSEHIEEAAR 398
            +R  YN   YL+ R+ MM W++++I+  +R
Sbjct: 361 AIRGTYNHAQYLDGRREMMQWYADYIDSLSR 391