Pairwise Alignments

Query, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., Prophage integrase IntS from Escherichia fergusonii Becca

 Score =  235 bits (600), Expect = 2e-66
 Identities = 139/422 (32%), Positives = 232/422 (54%), Gaps = 21/422 (4%)

Query: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67
           LTD +I+A+KP +K Y L DG G+ L + PNGS+ W   Y     GK   L+ G+YP++S
Sbjct: 3   LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYR--ILGKEKTLALGVYPEVS 60

Query: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127
           L +AR     A++LI++GIDP + +KR ++V  ++ + +FE++ + W A         ++
Sbjct: 61  LSEARTKRDEARKLISEGIDPCE-QKRAKKVVPDL-QLSFEHIARRWHA-SNKQWAQSHS 117

Query: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187
             + +SLE H+FP I ++ +  +  P+++  ++  EAK   E   RL QR++ VM +A  
Sbjct: 118 DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ 177

Query: 188 CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT 247
            G+I+ NP   +  A    K+++  AL  + LPEL+S I +   +  TR  +   L    
Sbjct: 178 SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFI 237

Query: 248 RPAEASGARWDEINWEEKVWTIPAER------------MKKRREHRIPLTEQMLALLEVM 295
           R +E   ARW EI+ +  +WTIPAER             K R  H +PL++Q +A+L  +
Sbjct: 238 RSSELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL 297

Query: 296 KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGF--AGRLVSHGLRSLASTTLNEQG-F 352
           +  +G    IF     P+KP +  T N AL+ MG+     +  HG R++A + L E G +
Sbjct: 298 QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLW 357

Query: 353 DPDLVESALAHVDDNQVRSAY-NRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN 411
             D VE  ++H + N VR+AY ++ ++LE R+ M+ WW++ ++      +S     ++ N
Sbjct: 358 SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNN 417

Query: 412 KL 413
            L
Sbjct: 418 PL 419